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Curated Collections

Medical Imaging & Visualization Applications

Open‐source applications that provide advanced visualization, processing, and quantitative analysis of medical images – including segmentation, registration, and tractography – to support clinical and research workflows.

The Linux Foundation

by The Linux Foundation

32 projects ・ Updated 14 Mar 2025

Project
Contributors
Organizations
Software value
OHIF Medical Imaging Viewer
1,904
199
$9.3M
Cellpose
1,144
131
$724K
ITK
963
153
$77M
SOFA
904
45
$18M
Cornerstone.js
880
83
$8.3M
3D Slicer
808
92
$20M
ANTs
790
106
$5.4M
FieldTrip
694
74
$23M
CaImAn
564
67
$1.5M
SimpleITK
548
111
$6.8M
ilastik
516
77
$5.8M
NiBabel
509
151
$2.2M
QuPath
471
65
$6.3M
C-PAC
432
74
$5.7M
MITK
410
17
$21M
Fiji
399
65
$326K
Common Toolkit
395
63
$7.9M
InVesalius
345
37
$3.7M
Spinal Cord Toolbox
341
51
$1.6M
HeuDiConv
305
78
$369K
matRad
289
13
$1.4M
Gadgetron
288
34
$5.5M
elastix
276
40
$5.5M
AFNI (Analysis of Functional NeuroImages)
226
45
$65M
STIR
193
18
$7.7M
ShapeWorks
159
12
$18M
WEBKNOSSOS
157
30
$10M
Scilpy
150
11
$2.1M
Brain Imaging Analysis Kit
133
24
$2.2M
Grand Challenge
0
0
$0
MONAI
0
0
$0
NA-MIC Project Weeks
0
0
$0
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