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Scientific Image Viewers

Interactive image viewers for exploring multi‐dimensional scientific image data with support for plugins and analysis – ideal for research applications in Python.

8 projects

5,375 contributors

$37M

PyQtGraph

Fast data visualization and GUI tools for scientific / engineering applications

Contributors

1,677

Organizations

278

Software value

$3.1M

Integrative Genomics Viewer (IGV)

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Contributors

1,025

Organizations

157

Software value

$7.6M

VisPy

Main repository for Vispy

Contributors

977

Organizations

239

Software value

$3.1M

napari

napari is a multi-dimensional image viewer for Python that supports large, complex datasets. It provides a fast, interactive interface for visualizing and analyzing scientific imaging data, with support for various file formats, plugins, and integration with popular scientific Python libraries.

Contributors

952

Organizations

259

Software value

$5.3M

Auspice

Web app for visualizing pathogen evolution

Contributors

266

Organizations

53

Software value

$1.5M

Tomviz

Tomviz is an open-source software platform for the visualization and analysis of 3D tomographic data, particularly focused on electron tomography. It enables scientists to process, visualize, and analyze 3D microscopy data, supporting features like reconstruction, segmentation, and volume rendering of scientific datasets.

Contributors

170

Organizations

27

Software value

$2.7M

WEBKNOSSOS

Visualize, share and annotate your large 3D images online

Contributors

157

Organizations

30

Software value

$10M

Vitessce

A visualization framework for spatial single-cell data that enables interactive exploration of complex biological datasets through configurable, component-based views. It supports multiple data types and modalities, allowing researchers to analyze spatial transcriptomics, imaging, and other single-cell data in an integrated way.

Contributors

151

Organizations

33

Software value

$3.9M

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