27 projects
Medical Imaging & Visualization Applications
Open‐source applications that provide advanced visualization, processing, and quantitative analysis of medical images – including segmentation, registration, and tractography – to support clinical and research workflows.
10,932 contributors
$264M
Most contributors
OHIF Medical Imaging Viewer
An open source medical imaging viewer platform that enables web-based visualization and interaction with DICOM images and other medical data. It provides a zero-footprint solution for healthcare professionals to view, analyze and manipulate medical images directly in web browsers.
Contributors
1,877
Organizations
196
Software value
$9.2M
ITK
ITK (Insight Toolkit) is an open-source, cross-platform library providing an extensive suite of software tools for image analysis, focusing on medical image processing and registration. It offers algorithms for segmentation, registration, filtering, and analysis of multi-dimensional scientific images.
Contributors
957
Organizations
148
Software value
$77M
SOFA
Real-time multi-physics simulation with an emphasis on medical simulation.
Contributors
897
Organizations
43
Software value
$18M
Cornerstone.js
Cornerstone.js is a JavaScript library for medical imaging that provides tools and APIs for loading, displaying, and manipulating medical images like DICOM in web browsers. It enables building zero-footprint medical imaging applications with support for 2D/3D visualization, MPR, volume rendering, and advanced medical image viewing capabilities.
Contributors
871
Organizations
78
Software value
$8.1M
3D Slicer
3D Slicer is an open-source software platform for medical image informatics, image processing, and three-dimensional visualization. It supports multi-modality imaging including MRI, CT, US, nuclear medicine, and microscopy. The platform provides advanced features for image analysis, visualization, registration, segmentation, and enables the development of custom modules and extensions.
Contributors
793
Organizations
91
Software value
$20M
ANTs
Advanced Normalization Tools (ANTs)
Contributors
788
Organizations
101
Software value
$5.4M
FieldTrip
The MATLAB toolbox for MEG, EEG and iEEG analysis
Contributors
688
Organizations
70
Software value
$23M
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Contributors
561
Organizations
66
Software value
$1.5M
ilastik
ilastik-shell, applets, and workflows to string them together.
Contributors
516
Organizations
76
Software value
$5.8M
NiBabel
Python package to access a cacophony of neuro-imaging file formats
Contributors
509
Organizations
144
Software value
$2.2M
C-PAC
Configurable Pipeline for the Analysis of Connectomes
Contributors
434
Organizations
73
Software value
$5.7M
Fiji
A "batteries-included" distribution of ImageJ :battery:
Contributors
393
Organizations
63
Software value
$326K
Spinal Cord Toolbox
Spinal Cord Toolbox (SCT) is a comprehensive software library for processing and analyzing MRI data of the spinal cord. It provides automated tools for segmentation, registration, motion correction, and extraction of various metrics from spinal cord MRI data.
Contributors
336
Organizations
49
Software value
$1.5M
HeuDiConv
Flexible DICOM conversion into structured directory layouts
Contributors
306
Organizations
75
Software value
$369K
matRad
matRad is an open-source treatment planning system for radiation therapy, providing tools for dose calculation and treatment plan optimization in medical physics applications. It enables simulation and optimization of radiation therapy plans for cancer treatment.
Contributors
285
Organizations
13
Software value
$1.4M
AFNI (Analysis of Functional NeuroImages)
Official AFNI source and documentation
Contributors
225
Organizations
45
Software value
$65M
STIR
STIR (Software for Tomographic Image Reconstruction) is an open-source software toolkit for 3D PET and SPECT image reconstruction. It provides algorithms and tools for medical imaging research, particularly in emission tomography, supporting both static and dynamic reconstructions.
Contributors
191
Organizations
19
Software value
$7.7M
WEBKNOSSOS
Visualize, share and annotate your large 3D images online
Contributors
157
Organizations
28
Software value
$10M
Scilpy
Scilpy is a Python library for diffusion MRI analysis and tractography processing, providing tools and utilities for medical image processing, fiber tracking, and brain connectivity analysis
Contributors
148
Organizations
11
Software value
$2.1M
Cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
This project hasn't been onboarded to LFX Insights.
Grand Challenge
A platform for end-to-end development of machine learning solutions in biomedical imaging
This project hasn't been onboarded to LFX Insights.
MONAI
AI Toolkit for Healthcare Imaging
This project hasn't been onboarded to LFX Insights.
NA-MIC Project Weeks
Website for NA-MIC Project Weeks
This project hasn't been onboarded to LFX Insights.
SimpleITK
SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.
This project hasn't been onboarded to LFX Insights.