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Curated Collections

Bioinformatics Pipelines

Pipelines for processing high‐throughput sequencing data – including RNA‑seq analysis pipelines that integrate tools for alignment, quantification, and quality control.

The Linux Foundation

by The Linux Foundation

16 projects ・ Updated 14 Mar 2025

Project
Contributors
Organizations
Software value
Nextflow
2,465
498
$17M
Snakemake
2,036
465
$1.7M
Picard
922
128
$3.2M
Cromwell
910
157
$8.4M
nf-core/rnaseq
695
113
$608K
TCGAbiolinks
687
56
$268K
Sarek
680
88
$2.5M
Nextstrain NCOV
410
64
$1.7M
nf-core/mag
291
47
$844K
nf-core/ampliseq
271
36
$379K
nf-core/scrnaseq
270
45
$2.1M
nf-core/methylseq
218
34
$292K
Dockstore
187
48
$4.4M
Warp Analysis Research Pipelines
186
17
$1.4M
Genome
146
11
$32M
nf-core config chooser
0
0
$0
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