13 projects
Snakemake
This is the development home of the workflow management system Snakemake. For general information, see
Contributors
2,001
Organizations
449
Software value
$1.7M
nf-core/rnaseq
A bioinformatics pipeline for RNA sequencing analysis that performs quality control, alignment, quantification and extensive quality control on RNA sequencing data
Contributors
654
Organizations
105
Software value
$1.1M
Dockstore
An app store for scientific workflows, tools, notebooks, and services
This project hasn't been onboarded to LFX Insights.
MAG Pipeline
Assembly and binning of metagenomes
This project hasn't been onboarded to LFX Insights.
MethylSeq Project
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
This project hasn't been onboarded to LFX Insights.
Nextflow
A DSL for data-driven computational pipelines
This project hasn't been onboarded to LFX Insights.
Nextstrain for SARS-CoV-2
Nextstrain build for SARS-CoV-2
This project hasn't been onboarded to LFX Insights.
Sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
This project hasn't been onboarded to LFX Insights.
Single-cell RNA-seq Pipeline
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
This project hasn't been onboarded to LFX Insights.
ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
This project hasn't been onboarded to LFX Insights.
nf-core config chooser
Config files used to define parameters specific to compute environments at different Institutions
This project hasn't been onboarded to LFX Insights.
warp
WDL Analysis Research Pipelines
This project hasn't been onboarded to LFX Insights.